Miscellaneous R code from AU-ENVS Bioinformatics

This repository contains RMarkdown notebooks for various purposes of the High Throughput Sequencing Center of the Department of Environmental Science, Aarhus University. Please, take a look at the documentation to see what’s available.

We distribute these notebooks as an R package. So, you just need to install it (and reinstall it to update it). As this package is currently under development for internal use, it’s not in CRAN and you have to install it from GitHub by

devtools::install_github("AU-ENVS-Bioinformatics/RauENVS")

You can start using it by loading the library

library(RauENVS)

and find RMarkdown templates in Rstudio. New file -> RMarkdown -> Template .

Please close and open Rstudio if you don’t see changes immediately :).

Example

If not using RMarkdown, download the template from Github (look into the “inst/rmarkdown/templates/) directory. All notebooks are called”skeleton.Rmd”.