Function reference • RauENVS

All functions

get_antismash_features(): Extract features from Antismash json files

get_antismash_modules(): Creates a dataframe with module information from antiSMASH data

get_antismash_regions(): Creates a dataframe with region information from antiSMASH data

get_bigscape_clustering(): Extract clustering information from bigscape

get_bigscape_networks(): Extract network information from bigscape

get_wants_hue(): Generate a palette using I Want Hue

make_physeq_tax_label_unique(): Make unique taxonomic labels from a Phyloseq taxonomyTable

phyloseq_template_toy_data: Phyloseq template toy data

remove_silva_prefix_from_taxtable(): Removes Silva prefix from a Phyloseq taxonomyTable

set_theme_AU_ENVS(): Set default AU-ENVS R theme